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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5c47 URM Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5c47 URMHisto-blood group ABO system transferase / 1.177
5c48 URMHisto-blood group ABO system transferase / 1.173
5c1l GDUHisto-blood group ABO system transferase / 1.098
5c3b URMHisto-blood group ABO system transferase / 1.025
5c1g GDUHisto-blood group ABO system transferase / 0.968
5c8r UPGHisto-blood group ABO system transferase / 0.968
3v0n 4GWHisto-blood group ABO system transferase / 0.936
3v0m 5GWHisto-blood group ABO system transferase / 0.927
3v0p 4GWHisto-blood group ABO system transferase / 0.924
5c3a URMHisto-blood group ABO system transferase / 0.923
3zgf IUGHisto-blood group ABO system transferase / 0.918
3v0o 4GWHisto-blood group ABO system transferase / 0.907
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.895
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.878
5c1h GDUHisto-blood group ABO system transferase / 0.872
5c4f UPGHisto-blood group ABO system transferase / 0.871
4kc4 WS3Histo-blood group ABO system transferase / 0.861
4kc1 WS1Histo-blood group ABO system transferase / 0.854
5c4c UPGHisto-blood group ABO system transferase / 0.852
5c4b UPGHisto-blood group ABO system transferase / 0.811
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.793
1zdf UPGGlycogenin-1 2.4.1.186 0.762
1zdg UPGGlycogenin-1 2.4.1.186 0.749
3rmw UPGGlycogenin-1 2.4.1.186 0.739
4kc2 WS2Histo-blood group ABO system transferase / 0.739
1yro GDUBeta-1,4-galactosyltransferase 1 / 0.726
3t7o UPGGlycogenin-1 2.4.1.186 0.724
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.687
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.678
3mj4 URMUDP-galactopyranose mutase / 0.666
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 0.657