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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5bw4 SAM Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5bw4 SAMUncharacterized protein / 0.920
4iwn GEKCarboxy-S-adenosyl-L-methionine synthase / 0.680
5d1n SAHUncharacterized protein / 0.678
3mte SAM16S rRNA (adenine(1408)-N(1))-methyltransferase 2.1.1.180 0.667
4l7v SAHProtein-L-isoaspartate O-methyltransferase / 0.665
3v8v SAMRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.664
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.659
3lov FADProtoporphyrinogen oxidase / 0.658
4gek GEKCarboxy-S-adenosyl-L-methionine synthase / 0.656
3sr4 TT8Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.655
1uay ADNOxidoreductase / 0.654
3orh SAHGuanidinoacetate N-methyltransferase 2.1.1.2 0.654