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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5bur ATP 2-succinylbenzoate--CoA ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5bur ATP2-succinylbenzoate--CoA ligase / 1.140
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.670
2p2b PRXAcetyl-coenzyme A synthetase / 0.657
2zxu DSTtRNA dimethylallyltransferase 2.5.1.75 0.653
3au2 DGTDNA polymerase beta family (X family) / 0.652