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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5av4 GEN Death-associated protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5av4 GENDeath-associated protein kinase 1 2.7.11.1 1.006
5auz GENDeath-associated protein kinase 1 2.7.11.1 0.954
5auw QUEDeath-associated protein kinase 1 2.7.11.1 0.817
5auu LU2Death-associated protein kinase 1 2.7.11.1 0.719
5auv AGIDeath-associated protein kinase 1 2.7.11.1 0.701
1pmv 537Mitogen-activated protein kinase 10 2.7.11.24 0.680
1u9e 397Estrogen receptor beta / 0.672
3dcv 55ESerine/threonine-protein kinase pim-1 2.7.11.1 0.668
3vbq 0F5Serine/threonine-protein kinase pim-1 2.7.11.1 0.658
4dgo 0JWCasein kinase II subunit alpha 2.7.11.1 0.658
1f0q EMOCasein kinase II subunit alpha 2.7.11.1 0.656
3cy3 JN5Serine/threonine-protein kinase pim-1 2.7.11.1 0.656
3sa0 NRAMitogen-activated protein kinase 1 2.7.11.24 0.656
3v8s 0HDRho-associated protein kinase 1 2.7.11.1 0.655
5dgz L20Serine/threonine-protein kinase pim-1 2.7.11.1 0.654
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
2wbg LGSBeta-glucosidase A 3.2.1.21 0.652