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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5auw QUE Death-associated protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5auw QUEDeath-associated protein kinase 1 2.7.11.1 1.113
5auu LU2Death-associated protein kinase 1 2.7.11.1 1.051
5av4 GENDeath-associated protein kinase 1 2.7.11.1 0.817
3t9i 3T9Serine/threonine-protein kinase pim-1 2.7.11.1 0.731
5auv AGIDeath-associated protein kinase 1 2.7.11.1 0.730
4c35 NU3cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.709
3amy AGICasein kinase II subunit alpha 2.7.11.1 0.702
3ls8 AJZPhosphatidylinositol 3-kinase catalytic subunit type 3 2.7.1.137 0.669
5auz GENDeath-associated protein kinase 1 2.7.11.1 0.658
4hkn LU2Tankyrase-2 2.4.2.30 0.657
2hiw 7MPTyrosine-protein kinase ABL1 2.7.10.2 0.656
2qa8 GENEstrogen receptor / 0.655
4mxa BK7Calmodulin-like domain protein kinase isoenzyme gamma, related / 0.651
2xwe AMFGlucosylceramidase 3.2.1.45 0.650