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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ajq DB8 Serine/threonine-protein kinase 10 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ajq DB8Serine/threonine-protein kinase 10 2.7.11.1 1.019
3ue4 DB8Tyrosine-protein kinase ABL1 2.7.10.2 0.772
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4mxo DB8Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.739
4qmn DB8Serine/threonine-protein kinase 24 2.7.11.1 0.723
4otw DB8Receptor tyrosine-protein kinase erbB-3 2.7.10.1 0.688
2rl5 2RLVascular endothelial growth factor receptor 2 2.7.10.1 0.681
3f5p 741Insulin-like growth factor 1 receptor 2.7.10.1 0.680
4dfl 0K0Tyrosine-protein kinase SYK 2.7.10.2 0.679
2h8h H8HProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.671
4mxy DB8Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.668
4mxz DB8Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.668
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660