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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ag6 MYA Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.844
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.775
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.732
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.730
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.722
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.700
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.676
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.664
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.655
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.642
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.614
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.526
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.503
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.493
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.484
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.472
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.464
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.435
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.419
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.415
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.392
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.388
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.381
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.376
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.373
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.363
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.324
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.297
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.175
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.011
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.000
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.981
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.807
2ou2 ACOHistone acetyltransferase KAT5 / 0.725
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.676
2vqy ACOAAC(6')-Ib / 0.674
1zz1 SHHHistone deacetylase-like amidohydrolase 3.5.1 0.664
2qpy DHTAndrogen receptor / 0.663
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.659
3owu EQUSteroid Delta-isomerase 5.3.3.1 0.652
1luq BTNStreptavidin / 0.650