Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5aaj HSC Peroxisomal bifunctional enzyme 1.1.1.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5aaj HSCPeroxisomal bifunctional enzyme 1.1.1.35 1.548
1mj3 HXCEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.733
1dub CAAEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.725
1ey3 DAKEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.720
3q0g BCOProbable enoyl-CoA hydratase echA8 4.2.1.17 0.712
3zw9 T1GPeroxisomal bifunctional enzyme 1.1.1.35 0.694
2dub CO8Enoyl-CoA hydratase, mitochondrial 4.2.1.17 0.685
4qii 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.684
3q0j CAAProbable enoyl-CoA hydratase echA8 4.2.1.17 0.669
4ylh YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 0.669
3t88 S0N1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.666
1sg4 CO8Enoyl-CoA delta isomerase 1, mitochondrial 5.3.3.8 0.662
4i4z 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.652