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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a8e XTK Beta-1 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a8e XTKBeta-1 adrenergic receptor / 1.153
4bvn P32Beta-1 adrenergic receptor / 1.038
2vt4 P32Beta-1 adrenergic receptor / 0.956
5d6l CAUBeta-2 adrenergic receptor / 0.906
4amj CVDBeta-1 adrenergic receptor / 0.897
5d5a CAUBeta-2 adrenergic receptor / 0.874
3nya JTZBeta-2 adrenergic receptor / 0.874
5d5b CAUBeta-2 adrenergic receptor / 0.873
2ycy P32Beta-1 adrenergic receptor / 0.871
5jqh CAUBeta-2 adrenergic receptor / 0.839
2ycw CAUBeta-1 adrenergic receptor / 0.834
4ami G90Beta-1 adrenergic receptor / 0.825
2ycz I32Beta-1 adrenergic receptor / 0.820
3d4s TIMBeta-2 adrenergic receptor / 0.809
3ny9 JSZBeta-2 adrenergic receptor / 0.774
4ldl XQCBeta-2 adrenergic receptor / 0.763
4gbr CAUBeta-2 adrenergic receptor / 0.751
2y02 WHJBeta-1 adrenergic receptor / 0.742
2rh1 CAUBeta-2 adrenergic receptor / 0.735
2ycx P32Beta-1 adrenergic receptor / 0.720
5f8u P32Beta-1 adrenergic receptor / 0.717
2y03 5FWBeta-1 adrenergic receptor / 0.709
4lde P0GBeta-2 adrenergic receptor / 0.701
3p0g P0GBeta-2 adrenergic receptor / 0.689
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.656