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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a28 MYA Glycylpeptide N-tetradecanoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.790
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 1.731
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.727
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.718
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 1.718
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 1.715
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.702
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.700
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.696
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 1.693
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.674
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 1.630
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.621
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 1.556
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.507
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.506
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.503
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.480
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.470
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 1.457
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.453
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 1.439
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.391
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.359
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.343
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.313
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 1.307
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 1.187
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.037
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.028
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.001
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.991
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.772
4qvt ACOAcetyltransferase YpeA 2.3.1 0.684
3pgp ACOUncharacterized protein / 0.682
3mgd ACOPredicted acetyltransferase / 0.681
3exn ACOProbable acetyltransferase / 0.674
3v2y ML5Sphingosine 1-phosphate receptor 1 / 0.672
2x7b COAN-alpha-acetyltransferase 2.3.1 0.665
2gd2 CAAProbable alpha-methylacyl-CoA racemase Mcr (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase ) / 0.662
3jpv 1DRSerine/threonine-protein kinase pim-1 2.7.11.1 0.661
4dne DTBStreptavidin / 0.660
5kf9 ACOPredicted acetyltransferase / 0.660