scPDB - Distribution of Binding mode Similarity values of 4zvr entry / Site 2

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4zvr	ASP_GLU_VAL_ACE_ASJ	Caspase-7	3.4.22.60

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
4zvr	ASP_GLU_VAL_ACE_ASJ	Caspase-7	3.4.22.60	0.978
4zvp	ASP_GLU_VAL_ACE_ASA	Caspase-7	3.4.22.60	0.753
4pry	LEU_GLU_THR_ACE_ASA	Caspase-3	3.4.22.56	0.710
3r7n	ASP_VAL_ALA_ACE_ASA	Caspase-2	3.4.22.55	0.665