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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zu4 4TG WxcM-like protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4zu4 4TGWxcM-like protein / 1.382
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.716
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.700
2x0q ATPAlcaligin biosynthesis protein / 0.666
3bmo NAPPteridine reductase / 0.662
4hmz 18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase 5.1.3.27 0.660
4hn1 TYDdTDP-4-dehydro-6-deoxyglucose 3-epimerase 5.1.3.27 0.660
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.658
4clo NAPPteridine reductase / 0.651