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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yxs EMU cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yxs EMUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.823
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
3x2u ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
4ib3 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.666
3bwj ARXcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.662
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
3kn5 ANPRibosomal protein S6 kinase alpha-5 2.7.11.1 0.658
4x6r ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
2puc GUNHTH-type transcriptional repressor PurR / 0.654
5cvh ADPCasein kinase II subunit alpha 2.7.11.1 0.653
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.652
3idc ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651