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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yvb BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yvb BTNStreptavidin / 1.061
1mk5 BTNStreptavidin / 1.034
1swe BTNStreptavidin / 1.000
3ry2 BTNStreptavidin / 1.000
3wyq BTNStreptavidin / 0.997
3wyp BSOStreptavidin / 0.994
2y3f BTNStreptavidin / 0.983
2izi BTNStreptavidin / 0.974
2izj BTNStreptavidin / 0.973
4gda BTNStreptavidin / 0.960
1luq BTNStreptavidin / 0.953
2rtg BTNStreptavidin / 0.947
3rdo BTNStreptavidin / 0.945
2zsc BTNTamavidin2 / 0.940
3rdq DTBStreptavidin / 0.940
1df8 BTNStreptavidin / 0.939
2izf BTNStreptavidin / 0.938
1i9h BNIStreptavidin / 0.933
2izh BTNStreptavidin / 0.918
2rtd BTNStreptavidin / 0.911
2rtf BTNStreptavidin / 0.911
1swr BTNStreptavidin / 0.909
4gd9 BTNStreptavidin / 0.901
4dne DTBStreptavidin / 0.889
4bx7 B4FStreptavidin / 0.887
1stp BTNStreptavidin / 0.886
4z28 BTNHoefavidin / 0.884
1lcz BH7Streptavidin / 0.883
1rxj BNIStreptavidin / 0.882
1swg BTNStreptavidin / 0.879
1swp BTNStreptavidin / 0.879
1n43 BTNStreptavidin / 0.877
1n9m BTNStreptavidin / 0.877
2rte BTNStreptavidin / 0.873
2izg BTNStreptavidin / 0.872
1ndj BTNStreptavidin / 0.867
2c4i BTNAvidin / 0.867
1swd BTNStreptavidin / 0.861
2rtr IMIStreptavidin / 0.859
2rtn IMIStreptavidin / 0.855
1swp BTQStreptavidin / 0.853
2uyw BTNAvd protein / 0.847
2rtq IMIStreptavidin / 0.839
1lcw SHMStreptavidin / 0.835
1y52 BTNAvidin-related protein 4/5 / 0.830
1swt BTNStreptavidin / 0.828
2rtp IMIStreptavidin / 0.820
3t2w BTNAvidin/streptavidin / 0.812
4bcs BTNAvidin-related protein 4/5 / 0.810
3ew2 BTNHypothetical conserved protein / 0.809
4bj8 BTNAvidin / 0.809
2rtm IMIStreptavidin / 0.804
1mep BTNStreptavidin / 0.795
2fhn BNIAvidin-related protein 4/5 / 0.795
2izl IMIStreptavidin / 0.792
3wzn BTNStreptavidin / 0.789
2fhl BNIAvidin-related protein 4/5 / 0.783
1rxh BNIStreptavidin / 0.774
1nc9 IMIStreptavidin / 0.773
3vgw NVZAvidin / 0.764
3vhi VHIAvidin / 0.757
2avi BTNAvidin / 0.730
1nqm BTNStreptavidin / 0.729
4ggz BTNBll1558 protein / 0.725
1swn BTNStreptavidin / 0.717
3vhm NPKAvidin / 0.717
1ij8 BNIAvidin / 0.707
2uz2 BTNAvd protein / 0.691
2rtl IMIStreptavidin / 0.682
1avd BTNAvidin / 0.659
2rtk GLLStreptavidin / 0.654