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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yp5 NAP Nicotinamide-nucleotide adenylyltransferase 2.7.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yp5 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 1.200
4yp7 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 1.152
4yp6 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 1.056
1m8k NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.995
1ej2 NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.810
1m8g NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.807
1m8j NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.804
2qjo NADBifunctional NMN adenylyltransferase/Nudix hydrolase 2.7.7.1 0.713
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.661