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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yb7 ATP ATP phosphoribosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yb7 ATPATP phosphoribosyltransferase / 1.046
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.676
3tw6 ADPPyruvate carboxylase / 0.674
4kxn 6K62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.666
5c3z ACPRibokinase / 0.661
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.656
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.654
4fkx CDPNucleoside diphosphate kinase / 0.654
2j9g ADPBiotin carboxylase 6.3.4.14 0.652
2xau ADPPre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 3.6.4.13 0.652
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.652
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.651