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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yao 2AM NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yao 2AMNADPH--cytochrome P450 reductase / 0.950
4yau 2AMNADPH--cytochrome P450 reductase / 0.913
4yal 2AMNADPH--cytochrome P450 reductase / 0.910
4yaf 2AMNADPH--cytochrome P450 reductase / 0.880
3qfs NAPNADPH--cytochrome P450 reductase / 0.876
3qft NAPNADPH--cytochrome P450 reductase / 0.876
4y7c NAPNADPH--cytochrome P450 reductase / 0.875
4yaw 2AMNADPH--cytochrome P450 reductase / 0.875
3qfc NAPNADPH--cytochrome P450 reductase / 0.865
4y9u NAPNADPH--cytochrome P450 reductase / 0.860
1ja1 NAPNADPH--cytochrome P450 reductase / 0.852
3qe2 NAPNADPH--cytochrome P450 reductase / 0.845
3ojx NAPNADPH--cytochrome P450 reductase / 0.832
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.829
1ja0 NAPNADPH--cytochrome P450 reductase / 0.804
4y9r NAPNADPH--cytochrome P450 reductase / 0.799
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.795
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.790
1gjr NAPFerredoxin--NADP reductase 1.18.1.2 0.759
3qfr NAPNADPH--cytochrome P450 reductase / 0.752
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.741
1amo NAPNADPH--cytochrome P450 reductase / 0.727
1w87 NAPFerredoxin--NADP reductase 1.18.1.2 0.722
2bf4 NAPNADPH--cytochrome P450 reductase / 0.693
2bn4 NAPNADPH--cytochrome P450 reductase / 0.689
2bpo NAPNADPH--cytochrome P450 reductase / 0.675
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.665
1rx5 DDFDihydrofolate reductase 1.5.1.3 0.659
4kyh ZSTLactoylglutathione lyase 4.4.1.5 0.658
2qx7 NAPEugenol synthase 1 1.1.1.318 0.655
3s87 DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.653
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.651
2cvx DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.651
3r3d 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.651
2p1o NLAProtein TRANSPORT INHIBITOR RESPONSE 1 / 0.650