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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4y9u FAD NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4y9u FADNADPH--cytochrome P450 reductase / 1.492
4y7c FADNADPH--cytochrome P450 reductase / 1.466
4yau FADNADPH--cytochrome P450 reductase / 1.332
4yaf FADNADPH--cytochrome P450 reductase / 1.317
4y9r FADNADPH--cytochrome P450 reductase / 1.244
3qe2 FADNADPH--cytochrome P450 reductase / 1.236
1ja1 FADNADPH--cytochrome P450 reductase / 1.228
3ojw FADNADPH--cytochrome P450 reductase / 1.226
3qfs FADNADPH--cytochrome P450 reductase / 1.226
3qfc FADNADPH--cytochrome P450 reductase / 1.204
3ojx FADNADPH--cytochrome P450 reductase / 1.165
4yao FADNADPH--cytochrome P450 reductase / 1.150
1ja0 FADNADPH--cytochrome P450 reductase / 1.107
3qft FADNADPH--cytochrome P450 reductase / 1.095
1amo FADNADPH--cytochrome P450 reductase / 1.081
3qfr FADNADPH--cytochrome P450 reductase / 1.061
1j9z FADNADPH--cytochrome P450 reductase / 1.029
2rc5 FADFerredoxin--NADP reductase / 1.021
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.012
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.006
2rc6 FADFerredoxin--NADP reductase / 0.992
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.985
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.978
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.976
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.969
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.966
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.965
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.960
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.954
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.951
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.948
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.948
3fpk FADFerredoxin-NADP reductase / 0.946
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.945
2bf4 FADNADPH--cytochrome P450 reductase / 0.944
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.937
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.937
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.935
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.929
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.925
1que FADFerredoxin--NADP reductase 1.18.1.2 0.924
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.922
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.914
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.908
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.903
3w5u FADFerredoxin / 0.902
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.901
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.899
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.892
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.892
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.891
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.890
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.887
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.877
1gaq FADFerredoxin / 0.875
2bpo FADNADPH--cytochrome P450 reductase / 0.869
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.862
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.860
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.836
1sm4 FADFerredoxin--NADP reductase / 0.833
1tll FADNitric oxide synthase, brain 1.14.13.39 0.833
2eix FADNADH-cytochrome b5 reductase / 0.833
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.831
3vo2 FADFerredoxin--NADP reductase / 0.829
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.829
2pia FMNPhthalate dioxygenase reductase / 0.824
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.822
2bn4 FADNADPH--cytochrome P450 reductase / 0.822
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.822
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.820
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.809
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.809
1cqx FADFlavohemoprotein / 0.805
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.803
4fk8 FADFerredoxin--NADP reductase / 0.801
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.799
1gaw FADFerredoxin / 0.784
3crz FADFerredoxin--NADP+ reductase / 0.784
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.766
2vnj FADNADPH:ferredoxin reductase / 0.755
2vnh FADNADPH:ferredoxin reductase / 0.753
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.746
2qdx FADFerredoxin--NADP+ reductase / 0.746
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.744
2bgj FADNADPH:ferredoxin reductase / 0.742
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.740
1gvh FADFlavohemoprotein / 0.738
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.735
4b4d FADFerredoxin-NADP reductase / 0.728
2bgi FADNADPH:ferredoxin reductase / 0.726
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.723
2vnk FADNADPH:ferredoxin reductase / 0.721
2ptf FMNUncharacterized protein MTH_863 / 0.719
2gpj FADSiderophore-interacting protein / 0.718
3e4v FMNUncharacterized protein / 0.707
2iml FMNUncharacterized protein / 0.703
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.693
4hnb FMNLOV protein / 0.693
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.691
4ees FMNPhototropin-2 2.7.11.1 0.689
4eet FMNPhototropin-2 2.7.11.1 0.687
3in6 FMNUncharacterized protein / 0.684
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.683
4eep FMNPhototropin-2 2.7.11.1 0.681
3a6q FMNFMN-binding protein / 0.678
3a6r FMNFMN-binding protein / 0.678
3vy2 FMNFMN-binding protein / 0.678
4hj3 FMNLOV protein / 0.677
4k1x FADNADPH:ferredoxin reductase / 0.677
1wlk FMNFMN-binding protein / 0.676
4hj6 FMNLOV protein / 0.676
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.673
2apg FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.668
2z6d FMNPhototropin-2 2.7.11.1 0.667
1eje FMNProtein MTH_152 / 0.665
1a8p FADFerredoxin--NADP reductase / 0.664
1rz1 FADPhenol 2-hydroxylase component B / 0.662
1wli FMNFMN-binding protein / 0.662
2nr4 FMNConserved protein / 0.662
1flm FMNFMN-binding protein / 0.660
4f07 FADStyrene monooxygenase component 2 / 0.660
2e83 FMNFMN-binding protein / 0.658
2pr5 FMNBlue-light photoreceptor / 0.657
2z6c FMNPhototropin-1 2.7.11.1 0.657
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.656
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.656
2pdt FADVivid PAS protein VVD / 0.656
2zev B71Geranylgeranyl pyrophosphate synthase / 0.653
3a20 FMNFMN-binding protein / 0.653
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.653
4ybn FADFlavin-nucleotide-binding protein / 0.652
5j3w FMNSensory box protein / 0.652
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.651