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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4y9q C2E Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4y9q C2EUncharacterized protein / 1.146
4lj3 C2ECyclic di-GMP phosphodiesterase YahA 3.1.4 0.909
4hjf C2EGGDEF family protein / 0.898
3gg1 C2EUncharacterized protein / 0.813
3gfx C2EUncharacterized protein / 0.736
4rnh C2EMotility regulator / 0.729
3gfz C2EUncharacterized protein / 0.715
3pju C2EDiguanylate cyclase/phosphodiesterase / 0.683