scPDB - Distribution of Binding mode Similarity values of 4xt8 entry / Site 1

Distribution of Interaction pattern similarity measured by Grim

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Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4xt8	TMQ	Possible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reduc

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
4xt8	TMQ	Possible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reduc	/	1.054
1g7u	PEP	2-dehydro-3-deoxyphosphooctonate aldolase	2.5.1.55	0.744
4e5i	0N9	Polymerase acidic protein	/	0.744
4e5f	0N7	Polymerase acidic protein	/	0.660
1m79	MQ1	Dihydrofolate reductase	1.5.1.3	0.650