sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 1.007 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.850 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.743 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.740 | |
| 4crz | ACO | PanD regulatory factor | / | 0.735 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.733 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.731 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.730 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.728 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.726 | |
| 4cry | ACO | PanD regulatory factor | / | 0.722 | |
| 1pu9 | COA | HAT A1 | / | 0.721 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.721 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.719 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.719 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.719 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.719 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.710 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.709 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.709 | |
| 2b4d | COA | Diamine acetyltransferase 1 | / | 0.708 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.703 | |
| 1qsr | ACO | HAT A1 | / | 0.699 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.699 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.697 | |
| 5c88 | COA | N-alpha-acetyltransferase | / | 0.695 | |
| 5kf9 | COA | Predicted acetyltransferase | / | 0.693 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.691 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.686 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.684 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.684 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.683 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.683 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.683 | |
| 4kub | COA | Uncharacterized protein | / | 0.683 | |
| 3d2p | COA | Amino-acid acetyltransferase | / | 0.682 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.682 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.677 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.675 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.672 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.671 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.671 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.669 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.666 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.665 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.665 | |
| 2b58 | COA | Diamine acetyltransferase 1 | / | 0.663 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.658 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.657 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.657 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.655 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.654 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.654 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.651 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.651 |