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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xg1 LLP Diaminopimelate decarboxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xg1 LLPDiaminopimelate decarboxylase / 1.153
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.693
1blz ACVIsopenicillin N synthase 1.21.3.1 0.686
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.685
1obn ASVIsopenicillin N synthase 1.21.3.1 0.684
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.684
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.682
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.681
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.681
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.677
1njj ORXOrnithine decarboxylase / 0.676
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.674
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.658