Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xf7 ACP Carbohydrate/pyrimidine kinase, PfkB family

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xf7 ACPCarbohydrate/pyrimidine kinase, PfkB family / 1.026
4xf6 ADPCarbohydrate/pyrimidine kinase, PfkB family / 0.781
4o1g AGSAdenosine kinase 2.7.1.20 0.690
2pkn ACPAdenosine kinase 2.7.1.20 0.677
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.666
5ce3 ADPProtein kinase YopO / 0.655
2f02 ATPTagatose-6-phosphate kinase / 0.654
2z08 ATPUniversal stress protein family / 0.651
1rfu ADPPyridoxal kinase 2.7.1.35 0.650