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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xdm GDM Heat shock cognate 90 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xdm GDMHeat shock cognate 90 kDa protein / 1.049
1osf KOSHeat shock protein HSP 90-alpha / 0.893
2esa GDMEndoplasmin / 0.871
1yet GDMHeat shock protein HSP 90-alpha / 0.856
4jql VJ6Heat shock protein HSP 90-alpha / 0.816
3c11 GDMATP-dependent molecular chaperone HSP82 / 0.812
2exl GDMEndoplasmin / 0.801
2vw5 BC6ATP-dependent molecular chaperone HSP82 / 0.785
2vwc BC2ATP-dependent molecular chaperone HSP82 / 0.741
4asg 814ATP-dependent molecular chaperone HSP82 / 0.705
4as9 4QSATP-dependent molecular chaperone HSP82 / 0.691
3q5l KX2Heat shock protein 83-1 / 0.684
3pej BC2Endoplasmin homolog, putative / 0.679
4asf 62UATP-dependent molecular chaperone HSP82 / 0.653