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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4wso NAD Probable nicotinate-nucleotide adenylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 1.315
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.977
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.964
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.828
2h29 DNDProbable nicotinate-nucleotide adenylyltransferase / 0.778
1i7l ATPSynapsin-2 / 0.718
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.712
1n2h PAJPantothenate synthetase 6.3.2.1 0.680
5bsf NADPyrroline-5-carboxylate reductase / 0.680
3coy 53HPantothenate synthetase 6.3.2.1 0.678
3coz 54HPantothenate synthetase 6.3.2.1 0.678
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.677
1n2i PAJPantothenate synthetase 6.3.2.1 0.675
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.670
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.669
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.660
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.660
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.660
3apy FADMethylenetetrahydrofolate reductase / 0.660
4gt3 ATPMitogen-activated protein kinase 1 2.7.11.24 0.660
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.657
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.655
3qtt ANPPantothenate synthetase / 0.651
4m69 ANPReceptor-interacting serine/threonine-protein kinase 3 2.7.11.1 0.650