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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4uyf 73B Bromodomain-containing protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4uyf 73BBromodomain-containing protein 2 / 1.192
4uyg 73BBromodomain-containing protein 2 / 0.802
4bjx 73BBromodomain-containing protein 4 / 0.752
2yek EAMBromodomain-containing protein 2 / 0.678
4j0s 1H3Bromodomain-containing protein 4 / 0.653