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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4uxx ACP Diacylglycerol kinase 2.7.1.107

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4uxx ACPDiacylglycerol kinase 2.7.1.107 0.951
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.725
3t9a ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.718
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.710
1m0w ANPGlutathione synthetase 6.3.2.3 0.707
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.706
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.706
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.691
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.684
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.683
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.679
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.679
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.676
3tw6 ADPPyruvate carboxylase / 0.674
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.672
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.671
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.669
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.669
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.667
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.665
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.661
1pk8 ATPSynapsin-1 / 0.660
2vqd AP2Biotin carboxylase 6.3.4.14 0.660
4ffm ADPUncharacterized protein / 0.659
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.657
2zdg ADPD-alanine--D-alanine ligase / 0.656
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.656
2x0q ATPAlcaligin biosynthesis protein / 0.653
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652
2j9g ADPBiotin carboxylase 6.3.4.14 0.651
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.651
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
3x2u ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
4mam A12N5-carboxyaminoimidazole ribonucleotide synthase / 0.650
4o4d ATPKinase / 0.650