Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4uug | PXG | Branched-chain amino acid aminotransferase, putative |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4uug | PXG | Branched-chain amino acid aminotransferase, putative | / | 1.006 | |
4cmf | PXG | Uncharacterized protein | / | 0.862 | |
2daa | DCS | D-alanine aminotransferase | 2.6.1.21 | 0.836 | |
3lqs | PSZ | D-alanine aminotransferase | 2.6.1.21 | 0.819 | |
3daa | PDD | D-alanine aminotransferase | 2.6.1.21 | 0.783 | |
1daa | PLP | D-alanine aminotransferase | 2.6.1.21 | 0.750 | |
2ej2 | PPE | Branched-chain amino acid aminotransferase (IlvE) | / | 0.735 | |
1kt8 | ILP | Branched-chain-amino-acid aminotransferase, mitochondrial | 2.6.1.42 | 0.722 | |
1i2l | DCS | Aminodeoxychorismate lyase | 4.1.3.38 | 0.670 |