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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4uga H4B Nitric oxide synthase oxygenase 1.14.13.165

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.763
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.750
4e5i 0N9Polymerase acidic protein / 0.744
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.714
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.693
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.693
4blt APCNTPase P4 / 0.688
4q9e XXHPeptidoglycan recognition protein 1 / 0.688
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.687
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.687
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.687
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.686
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.685
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.684
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.684
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.683
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.683
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.683
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.682
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.681
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.679
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.677
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.675
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.675
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.671
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.668
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.668
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.666
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.666
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.666
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.666
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.665
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.665
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.665
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.665
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.665
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.665
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.664
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.664
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.664
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.664
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.664
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.663
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.662
4a86 H35Major pollen allergen Bet v 1-A / 0.660
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.659
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.659
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.658
4bls APCNTPase P4 / 0.655
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.652