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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ug7 H4B Nitric oxide synthase oxygenase 1.14.13.165

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.763
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.750
4e5i 0N9Polymerase acidic protein / 0.744
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.705
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.691
4q9e XXHPeptidoglycan recognition protein 1 / 0.691
4blt APCNTPase P4 / 0.688
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.688
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.687
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.685
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.685
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.684
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.684
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.684
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.684
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.684
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.684
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.683
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.683
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.683
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.682
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.681
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.681
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.681
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.680
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.679
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.679
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.677
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.675
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.673
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.671
2eg2 ATPNitrogen regulatory protein P-II / 0.665
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.665
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.663
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.662
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.662
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.661
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.661
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.661
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.660
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.660
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.659
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.659
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.659
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.659
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.659
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.659
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.659
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.659
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.659
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.659
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.659
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.659
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.658
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.658
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.658
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.658
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.658
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.658
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.658
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.657
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.657
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.657
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.657
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.657
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.657
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.656
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.656
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.656
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.656
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.656
4a86 H35Major pollen allergen Bet v 1-A / 0.654
1sg0 STLRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652