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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4udc DEX Glucocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4udc DEXGlucocorticoid receptor / 1.168
3mne DEXGlucocorticoid receptor / 1.023
4uda DEXMineralocorticoid receptor / 0.909
4p6x HCYGlucocorticoid receptor / 0.845
2aa2 AS4Mineralocorticoid receptor / 0.816
2aax PDNMineralocorticoid receptor / 0.793
3mno DEXGlucocorticoid receptor / 0.777
3mnp DEXGlucocorticoid receptor / 0.766
2aa7 1CAMineralocorticoid receptor / 0.756
1m2z DEXGlucocorticoid receptor / 0.748
1y9r 1CAMineralocorticoid receptor / 0.742
1p93 DEXGlucocorticoid receptor / 0.723
2aa6 STRMineralocorticoid receptor / 0.717
2aa5 STRMineralocorticoid receptor / 0.711
4p6w MOFGlucocorticoid receptor / 0.708
2a3i C0RMineralocorticoid receptor / 0.687
1nhz 486Glucocorticoid receptor / 0.684
3vhu SNLMineralocorticoid receptor / 0.684
1gs4 ZK5Androgen receptor / 0.681
3s79 ASDAromatase 1.14.14.14 0.667
2abi 1CAMineralocorticoid receptor / 0.661
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.661
3eqm ASDAromatase 1.14.14.14 0.660
2q7i TESAndrogen receptor / 0.659
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.659
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.658
1sr7 MOFProgesterone receptor / 0.657
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.653
1ya3 STRMineralocorticoid receptor / 0.653
4a2j AS0Progesterone receptor / 0.651