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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ubs DIF Pentalenic acid synthase 1.14.15.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ubs DIFPentalenic acid synthase 1.14.15.11 0.985
2r2n KYNKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.679
3zp4 TSAChorismate mutase AroH 5.4.99.5 0.666
4ie0 PD2Alpha-ketoglutarate-dependent dioxygenase FTO / 0.661
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.660
1drt PCVClavaminate synthase 1 1.14.11.21 0.659
3vvh 4BMDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.655
3afh GSUGlutamate--tRNA ligase 2 / 0.652
3au2 DGTDNA polymerase beta family (X family) / 0.652
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 0.651
3wcz NAPAldo-keto reductase AKR2E4 / 0.650