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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ube 2FA Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ube 2FAAdenosine kinase 2.7.1.20 1.122
2pkk 2FAAdenosine kinase 2.7.1.20 1.110
2pkm ADNAdenosine kinase 2.7.1.20 1.012
3b1p NOSPfkB carbohydrate kinase family protein / 0.761
3vaq ADNPutative adenosine kinase / 0.698
2zbv ADNUncharacterized protein / 0.691
3otx AP5Adenosine kinase, putative / 0.682
4dc3 2FAPutative adenosine kinase / 0.681
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.678
3uq9 TBNPutative adenosine kinase / 0.677
3ou7 SAMSAM-dependent methyltransferase / 0.670
2k0g CMPCyclic nucleotide-gated potassium channel mll3241 / 0.668
1nbh SAMGlycine N-methyltransferase 2.1.1.20 0.666
3cr3 ADPPTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL 2.7 0.664
1uay ADNOxidoreductase / 0.662
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.661
3ou6 SAMSAM-dependent methyltransferase / 0.660
3uq6 ADNPutative adenosine kinase / 0.660
1kph SAHCyclopropane mycolic acid synthase 1 2.1.1.79 0.659
3v97 SAHRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.659
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.659
2zgv ADPPhosphoglycerate kinase 1 2.7.2.3 0.658
1ne6 SP1cAMP-dependent protein kinase type I-alpha regulatory subunit / 0.657
2v7u SAM5'-fluoro-5'-deoxy-adenosine synthase / 0.657
5je3 SAHMethyl transferase / 0.657
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.651
3h0r ATPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.650
4fkx CDPNucleoside diphosphate kinase / 0.650