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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4u9z COA Alpha-tubulin N-acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 1.353
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 1.230
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 1.111
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 1.106
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 1.097
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 1.094
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 1.077
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 1.046
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.939
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.763
2cy2 ACOProbable acetyltransferase / 0.752
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.747
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.747
4h6z ACOAlpha-tubulin N-acetyltransferase 1 / 0.747
4crz ACOPanD regulatory factor / 0.741
1qsr ACOHAT A1 / 0.738
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.738
1m1d LYXHAT A1 / 0.737
5kf9 ACOPredicted acetyltransferase / 0.722
3pgp ACOUncharacterized protein / 0.720
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.719
3k9u ACOSpermidine N(1)-acetyltransferase / 0.716
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.713
5kf8 ACOPredicted acetyltransferase / 0.706
2x7b COAN-alpha-acetyltransferase 2.3.1 0.703
5kf1 ACOPredicted acetyltransferase / 0.695
2giv ACOHistone acetyltransferase KAT8 / 0.693
5kgj ACOPredicted acetyltransferase / 0.693
2y0m ACOHistone acetyltransferase KAT8 / 0.692
5kf2 ACOPredicted acetyltransferase / 0.692
5kgp ACOPredicted acetyltransferase / 0.691
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.689
1mja COAHistone acetyltransferase ESA1 / 0.686
4kub COAUncharacterized protein / 0.686
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.683
2b58 COADiamine acetyltransferase 1 / 0.682
1fy7 COAHistone acetyltransferase ESA1 / 0.681
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.680
1mjb ACOHistone acetyltransferase ESA1 / 0.678
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.678
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.677
2jdc CAOProbable acetyltransferase / 0.676
4ava ACOAcetyltransferase Pat 2.3.1 0.676
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.675
1qsm ACOHistone acetyltransferase HPA2 / 0.671
1mj9 COAHistone acetyltransferase ESA1 / 0.670
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.668
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.662
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.662
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.660
1wwz ACOUncharacterized protein / 0.660
2b3v ACODiamine acetyltransferase 1 / 0.660
2r8v ACOAmino-acid acetyltransferase / 0.660
2a4n COAAac(6')-Ii protein / 0.659
3f0a ACOSpermidine N(1)-acetyltransferase / 0.658
2ou2 ACOHistone acetyltransferase KAT5 / 0.657
4nke IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.653
4psw COAHistone acetyltransferase type B catalytic subunit / 0.653
5kgh ACOPredicted acetyltransferase / 0.653
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.651
3sxn COAN-acetyltransferase Eis / 0.650