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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tx9 AMZ Phosphoribosyl isomerase A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4tx9 AMZPhosphoribosyl isomerase A / 0.936
2y88 2ERPhosphoribosyl isomerase A 5.3.1.16 0.906
5dn1 AMZPhosphoribosyl isomerase A 5.3.1.16 0.750
3i5x ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.660
2an9 GDPGuanylate kinase 2.7.4.8 0.655
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.654