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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ttb FMN Iodotyrosine deiodinase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ttb FMNIodotyrosine deiodinase 1 / 1.244
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 1.046
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 1.032
4ttc FMNIodotyrosine deiodinase 1 / 1.030
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.963
3eo8 FMNPutative nitroreductase / 0.907
3e39 FMNNitroreductase / 0.884
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.864
4qly FMNEnone reductase CLA-ER / 0.855
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.855
2wzw FMNNitroreductase NfnB / 0.851
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.842
3hj9 FMNUncharacterized protein / 0.818
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.815
3ge6 FMNNitroreductase / 0.812
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.784
2wzv FMNNitroreductase NfnB / 0.780
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.778
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.770
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.770
2ifa FMNUncharacterized protein / 0.764
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.755
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.736
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.733
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.732
3koq FMNPutative nitroreductase / 0.729
2bkj FMNNADPH-flavin oxidoreductase / 0.719
3pxv FMNNitroreductase / 0.714
3eof FMNPutative oxidase / 0.711
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.710
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.706
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.698
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.694
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.691
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.691
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.684
2fre FMNNAD(P)H-flavin oxidoreductase / 0.684
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.683
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.666
3of4 FMNNitroreductase / 0.666
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.665
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.665
1aj2 2PHDihydropteroate synthase / 0.664
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.660
1nd5 2BFProstatic acid phosphatase 3.1.3.2 0.653
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.650