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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ts7 ADP Purine phosphoribosyltransferase (GpT-1)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ts7 ADPPurine phosphoribosyltransferase (GpT-1) / 0.995
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.671
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.665
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.664
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.662
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.661
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.657
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.656
4bix ADPSensor histidine kinase CpxA / 0.656