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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tnr DTP Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4tnr DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 1.232
4tny DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.997
4to0 DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.985
4to6 DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.971
4tnz DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.967
4tnp DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.966
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.939
4qfx DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.933
4to3 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.916
4qfy DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.914
4tnx DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.907
4zwg DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.876
4tnq TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.867
4bzc T8TDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.829
4to5 TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.825
1esn ANPPantothenate kinase 2.7.1.33 0.690
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.682
2bc9 GNPGuanylate-binding protein 1 / 0.678
5l3s GNPSignal recognition particle receptor FtsY / 0.671
4dxj 0M9Farnesyl pyrophosphate synthase / 0.664
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.664
1w5t ANPORC1-type DNA replication protein 2 / 0.661
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.659
4qjk COAPhosphopantetheinyl transferase PptT (CoA:APO-[ACP]pantetheinephosphotransferase) (CoA:APO-[acyl-carrier protein]pantetheinephosphotransferase) / 0.659
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.657
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.657
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.656
4m3t ATPDNA-directed DNA polymerase / 0.654
3q9l ATPSeptum site-determining protein MinD / 0.653
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.651
1z2c GNPRho-related GTP-binding protein RhoC / 0.650