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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tmn 0PK Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4tmn 0PKThermolysin 3.4.24.27 1.188
4d9w X32Thermolysin 3.4.24.27 0.926
3t74 UBYThermolysin 3.4.24.27 0.924
3t87 UBZThermolysin 3.4.24.27 0.924
4h57 0PJThermolysin 3.4.24.27 0.909
2tmn 0FAThermolysin 3.4.24.27 0.878
3t8d UBVThermolysin 3.4.24.27 0.876
3t8c UBWThermolysin 3.4.24.27 0.871
6tmn 0PIThermolysin 3.4.24.27 0.865
3fv4 1U4Thermolysin 3.4.24.27 0.858
3t8h UBSThermolysin 3.4.24.27 0.851
4b52 RDFBacillolysin / 0.835
4cth RDFNeprilysin / 0.798
3fvp UB2Thermolysin 3.4.24.27 0.797
1u4g HPIElastase 3.4.24.26 0.736
3zuk RDFEndopeptidase, peptidase family M13 / 0.723
1r1j OIRNeprilysin / 0.721
3f28 S7BThermolysin 3.4.24.27 0.712
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.703
4zr5 RDFNeprilysin / 0.683
1r1i TI1Neprilysin / 0.673
1o86 LPRAngiotensin-converting enzyme 3.2.1 0.665
3aho 3A2Oligopeptidase / 0.663
3ahn 3A1Oligopeptidase / 0.661