Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tm1 FDA KtzI

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4tm1 FDAKtzI / 1.336
4tlx FDAKtzI / 1.262
4tm4 FDAKtzI / 1.260
4tlz FADKtzI / 1.046
4tm0 FADKtzI / 1.000
4b63 FADL-ornithine N(5)-monooxygenase / 0.988
4tm3 FADKtzI / 0.954
4b65 FADL-ornithine N(5)-monooxygenase / 0.913
4b68 FADL-ornithine N(5)-monooxygenase / 0.854
3s5w FADL-ornithine N(5)-monooxygenase / 0.831
5cku FADL-ornithine N(5)-monooxygenase / 0.826
4b64 FADL-ornithine N(5)-monooxygenase / 0.811
4hb9 FADUncharacterized protein / 0.786
4nzh FADL-ornithine N(5)-monooxygenase / 0.775
3kkj FADRenalase / 0.768
4b69 FADL-ornithine N(5)-monooxygenase / 0.765
2bac FADPutative aminooxidase / 0.763
4x4j FADPutative oxygenase / 0.761
3nlc FADUncharacterized protein / 0.758
4b66 FADL-ornithine N(5)-monooxygenase / 0.756
4b67 FADL-ornithine N(5)-monooxygenase / 0.754
4jq9 FADDihydrolipoyl dehydrogenase / 0.751
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.748
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.743
2q7v FADThioredoxin reductase / 0.743
2xvf FADPutative flavin-containing monooxygenase / 0.742
2yg5 FADPutrescine oxidase / 0.738
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.738
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.737
4j33 FADKynurenine 3-monooxygenase / 0.736
2xvi FADPutative flavin-containing monooxygenase / 0.735
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.734
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.733
2qa1 FADPgaE / 0.730
2yg3 FADPutrescine oxidase / 0.730
3ute FADUDP-galactopyranose mutase / 0.728
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.727
3lsh FADPyranose 2-oxidase / 0.727
1ger FADGlutathione reductase 1.8.1.7 0.726
1cbo FADCholesterol oxidase 1.1.3.6 0.724
1ojt FADDihydrolipoyl dehydrogenase / 0.724
3rha FDAPutrescine oxidase / 0.724
1zx9 FADMercuric reductase 1.16.1.1 0.723
1gsn FADGlutathione reductase, mitochondrial 1.8.1.7 0.722
3ad9 NADSubunit alpha of sarocosine oxidase / 0.721
3k30 ADPHistamine dehydrogenase / 0.721
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.721
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.721
1h83 FADPolyamine oxidase 1.5.3.14 0.717
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.717
4mok FADPyranose 2-oxidase / 0.717
1k0j FADp-hydroxybenzoate hydroxylase / 0.716
4dsg FADUncharacterized protein / 0.716
2yg7 FADPutrescine oxidase / 0.715
3lsi FADPyranose 2-oxidase / 0.715
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.715
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.714
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.714
3ada NADSubunit alpha of sarocosine oxidase / 0.714
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.713
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.713
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.711
1ryi FADGlycine oxidase 1.4.3.19 0.711
3atq FDAConserved Archaeal protein / 0.711
4a99 FADTetX family tetracycline inactivation enzyme / 0.711
2dki FAD3-hydroxybenzoate 4-monooxygenase 1.14.13.23 0.710
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.710
2vq7 FADPutative flavin-containing monooxygenase / 0.710
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.710
2yg4 FADPutrescine oxidase / 0.709
3cox FADCholesterol oxidase 1.1.3.6 0.709
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.708
1ijh FADCholesterol oxidase 1.1.3.6 0.708
1pdh FASp-hydroxybenzoate hydroxylase / 0.708
3lsm SFDPyranose 2-oxidase / 0.708
3t2k FADSulfide-quinone reductase / 0.708
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.706
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.706
2rgh FADAlpha-Glycerophosphate Oxidase / 0.706
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.705
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.705
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.705
4u2s FDACholesterol oxidase 1.1.3.6 0.705
2xlp FADPutative flavin-containing monooxygenase / 0.704
2xve FADPutative flavin-containing monooxygenase / 0.704
3uka FADUDP-galactopyranose mutase / 0.704
1grg FADGlutathione reductase, mitochondrial 1.8.1.7 0.703
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.702
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.702
4u2l SFDCholesterol oxidase 1.1.3.6 0.702
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.701
1rsg FADPolyamine oxidase FMS1 / 0.701
3gyj FADCholesterol oxidase 1.1.3.6 0.701
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.701
1y56 ATPUncharacterized protein / 0.700
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.700
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.700
4u2t FADCholesterol oxidase 1.1.3.6 0.700
4gr1 FADGlutathione reductase, mitochondrial 1.8.1.7 0.699
1n4v FADCholesterol oxidase 1.1.3.6 0.698
2eq7 FADDihydrolipoyl dehydrogenase / 0.698
2gew FADCholesterol oxidase 1.1.3.6 0.698
4rek FADCholesterol oxidase 1.1.3.6 0.698
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.698
1gpe FADGlucose oxidase 1.1.3.4 0.697
2ign FADPyranose 2-oxidase / 0.697
2iid FADL-amino-acid oxidase 1.4.3.2 0.697
4guv FADTetX family tetracycline inactivation enzyme / 0.697
2o07 MTASpermidine synthase 2.5.1.16 0.696
3ict FADCoenzyme A disulfide reductase / 0.696
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.696
4cnk FADL-amino acid oxidase / 0.696
1cc2 FADCholesterol oxidase 1.1.3.6 0.695
2xdo FADTetX family tetracycline inactivation enzyme / 0.695
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.695
3cnj FADCholesterol oxidase 1.1.3.6 0.695
3p9u FADTetX family tetracycline inactivation enzyme / 0.695
2cdu ADPNADH oxidase / 0.694
2gvc FADThiol-specific monooxygenase 1.14.13 0.694
2ym2 FADPhenylacetone monooxygenase 1.14.13.92 0.694
3gyi FADCholesterol oxidase 1.1.3.6 0.694
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.694
4xxg FADCholesterol oxidase 1.1.3.6 0.694
5dbj FADFADH2-dependent halogenase PltA / 0.694
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.693
1nhp FADNADH peroxidase 1.11.1.1 0.693
3b6d FAECholesterol oxidase 1.1.3.6 0.693
4txi FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.693
4aox FADSteroid monooxygenase / 0.692
4pyo SAHCatechol O-methyltransferase 2.1.1.6 0.692
2yls FADPhenylacetone monooxygenase 1.14.13.92 0.691
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.691
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.690
4yac NAIC alpha-dehydrogenase / 0.690
2uyh SAHModification methylase HhaI 2.1.1.37 0.689
3cty FADProbable thioredoxin reductase / 0.689
1n1p FADCholesterol oxidase 1.1.3.6 0.688
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.688
4xwr FADCholesterol oxidase 1.1.3.6 0.688
2jk6 FADTrypanothione reductase / 0.687
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.687
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.687
1geu FADGlutathione reductase 1.8.1.7 0.686
2yqu FADDihydrolipoyl dehydrogenase / 0.686
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.686
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.686
4j36 FADKynurenine 3-monooxygenase / 0.686
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.685
2ih2 NEAModification methylase TaqI 2.1.1.72 0.685
3atr FDAConserved Archaeal protein / 0.685
4d7e FADPutative lysine-N-oxygenase / 0.685
4gcm FADThioredoxin reductase 1.8.1.9 0.684
5je4 SAHMethyl transferase / 0.683
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.682
4yry FADGlutamate synthase, beta subunit / 0.682
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.681
3ish FADThioredoxin reductase 1.8.1.9 0.680
3qvp FADGlucose oxidase 1.1.3.4 0.680
3qvr FADGlucose oxidase 1.1.3.4 0.680
3sz0 FADSulfide-quinone reductase / 0.680
4k5r FADOxygenase / 0.680
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.679
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.679
1mxt FAECholesterol oxidase 1.1.3.6 0.679
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.679
3mht SAHModification methylase HhaI 2.1.1.37 0.679
3t2y FADSulfide-quinone reductase / 0.679
1n4w FADCholesterol oxidase 1.1.3.6 0.678
3hvk 719Catechol O-methyltransferase 2.1.1.6 0.678
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.678
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.677
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.677
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.677
3k4n FADPyranose 2-oxidase / 0.677
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.677
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.677
3pl8 FADPyranose 2-oxidase / 0.677
3r9u FADThioredoxin reductase / 0.677
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.677
1npx FADNADH peroxidase 1.11.1.1 0.676
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.676
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.676
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.676
5hsa FASAlcohol oxidase 1 1.1.3.13 0.676
1zmc NADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.675
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.675
2z6u SAHModification methylase HhaI 2.1.1.37 0.675
3bwc SAMSpermidine synthase, putative / 0.675
5buk FADFADH2-dependent halogenase / 0.675
2e1m FADL-glutamate oxidase / 0.674
3fg2 FADPutative rubredoxin reductase / 0.674
4em3 FADCoenzyme A disulfide reductase / 0.674
5hhf FDAUDP-galactopyranose mutase / 0.674
3h5n ATPMccB protein / 0.673
3he3 FADUDP-galactopyranose mutase / 0.673
4k2x FADPolyketide oxygenase/hydroxylase / 0.673
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.672
1nhs FADNADH peroxidase 1.11.1.1 0.672
1qo8 FADFumarate reductase flavoprotein subunit / 0.672
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.672
3vqr FADPutative oxidoreductase / 0.672
4fk1 FADPutative thioredoxin reductase / 0.672
1zk7 FADMercuric reductase 1.16.1.1 0.671
2eq8 FADDihydrolipoyl dehydrogenase / 0.671
1h81 FADPolyamine oxidase 1.5.3.14 0.670
2ore SAHDNA adenine methylase 2.1.1.72 0.670
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.670
4b1b FADThioredoxin reductase 1.8.1.9 0.670
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.669
2aot SAHHistamine N-methyltransferase 2.1.1.8 0.669
4gdp FADPolyamine oxidase FMS1 / 0.669
1gal FADGlucose oxidase 1.1.3.4 0.668
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.668
2x3n FADProbable FAD-dependent monooxygenase / 0.668
4usr FADMonooxygenase / 0.668
2vqb FADPutative flavin-containing monooxygenase / 0.667
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.667
1tyt FADTrypanothione reductase 1.8.1.12 0.665
2xvh FADPutative flavin-containing monooxygenase / 0.665
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.665
3lad FADDihydrolipoyl dehydrogenase / 0.665
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.665
1typ FADTrypanothione reductase 1.8.1.12 0.664
2tpr FADTrypanothione reductase 1.8.1.12 0.664
3cnt FADPolyamine oxidase FMS1 / 0.664
1nhr FADNADH peroxidase 1.11.1.1 0.663
2c4c FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.663
2igo FADPyranose 2-oxidase / 0.663
2pt6 S4MSpermidine synthase / 0.663
3cge FADCoenzyme A disulfide reductase / 0.663
4u8l FDAUDP-galactopyranose mutase / 0.663
3f8p NADNADH oxidase/thioredoxin reductase / 0.661
5c2t FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.661
1b8s FADCholesterol oxidase 1.1.3.6 0.660
1cf3 FADGlucose oxidase 1.1.3.4 0.659
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.659
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.659
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.658
1h2h NADL-aspartate dehydrogenase 1.4.1.21 0.658
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.658
4h50 FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
4rvd SAMD-mycarose 3-C-methyltransferase / 0.658
4bjz FADProbable salicylate monooxygenase / 0.656
4jn9 FADDepH / 0.656
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.655
4nte FADDepH / 0.655
4usq FADPyridine nucleotide-disulfide oxidoreductase / 0.655
1tdk FADL-amino-acid oxidase 1.4.3.2 0.654
3rw9 DSHSpermidine synthase 2.5.1.16 0.654
4kpr FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.654
3g8a SAHRibosomal RNA small subunit methyltransferase G / 0.653
4mo2 FADUDP-galactopyranose mutase / 0.653
1b4v FADCholesterol oxidase 1.1.3.6 0.651
2yg6 FADPutrescine oxidase / 0.651
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.651
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.651
4yv2 S4MSpermidine synthase, putative / 0.651
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.651
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.650
4aos FADSteroid monooxygenase / 0.650
5j60 FADThioredoxin reductase / 0.650
7mht SAHModification methylase HhaI 2.1.1.37 0.650