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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rww 2BA Lmo2692 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rww 2BALmo2692 protein / 1.195
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.711
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.690
1mjh ATPUniversal stress protein MJ0577 / 0.684
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.684
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.664
4jwf SAHtRNA (guanine(9)-N1)-methyltransferase / 0.661
5cfl C2EStimulator of interferon genes protein / 0.656