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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ruo BIV Vitamin D3 receptor A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ruo BIVVitamin D3 receptor A / 1.533
4ia2 BIVVitamin D3 receptor A / 1.147
4ia7 BIVVitamin D3 receptor A / 1.122
2hc4 VDXVitamin D3 receptor A / 1.118
4ruj VDXVitamin D3 receptor A / 1.112
4ia3 BIVVitamin D3 receptor A / 1.099
4ia1 BIVVitamin D3 receptor A / 1.053
2hbh XE4Vitamin D3 receptor A / 1.042
2hb8 MVDVitamin D3 receptor / 1.040
1ie8 KH1Vitamin D3 receptor / 1.031
3kpz ZNEVitamin D3 receptor / 1.027
1db1 VDXVitamin D3 receptor / 1.026
2hcd BIVVitamin D3 receptor A / 1.023
1rjk VDZVitamin D3 receptor / 1.015
1ie9 VDXVitamin D3 receptor / 1.004
4itf TFYVitamin D3 receptor / 0.991
1s0z EB1Vitamin D3 receptor / 0.988
2o4j VD4Vitamin D3 receptor / 0.982
4ite TEYVitamin D3 receptor / 0.979
3dr1 C5DVitamin D3 receptor A / 0.977
1s19 MC9Vitamin D3 receptor / 0.949
2zlc VDXVitamin D3 receptor / 0.945
1rkh VD2Vitamin D3 receptor / 0.942
3m7r VDXVitamin D3 receptor / 0.933
3vrt YS2Vitamin D3 receptor / 0.909
1rk3 VDXVitamin D3 receptor / 0.908
3vt7 VDXVitamin D3 receptor / 0.902
1txi TX5Vitamin D3 receptor / 0.883
3vt3 VDXVitamin D3 receptor / 0.871
2o4r VD5Vitamin D3 receptor / 0.777
1rkg VD1Vitamin D3 receptor / 0.766
4rup H97Vitamin D3 receptor A / 0.758
2hb7 O1CVitamin D3 receptor / 0.757
3vrv YSDVitamin D3 receptor / 0.757
3vt8 YI3Vitamin D3 receptor / 0.755
3vru YS3Vitamin D3 receptor / 0.753
3vt5 YI2Vitamin D3 receptor / 0.753
3vt6 5YIVitamin D3 receptor / 0.746
2zl9 VDAVitamin D3 receptor / 0.740
3a78 3EVVitamin D3 receptor / 0.738
3vtd TKDVitamin D3 receptor / 0.732
3vt9 YI4Vitamin D3 receptor / 0.730
3gki CLRNiemann-Pick C1 protein / 0.700
3w0h W12Vitamin D3 receptor / 0.690
3cv9 VDXVitamin D3 dihydroxylase / 0.658
2har OCCVitamin D3 receptor / 0.657
2zla VDBVitamin D3 receptor / 0.656
2has C3OVitamin D3 receptor / 0.652