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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rtp SAM DNA adenine methylase 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rtp SAMDNA adenine methylase 2.1.1.72 0.914
4rtm SAMDNA adenine methylase 2.1.1.72 0.841
4rtk SAHDNA adenine methylase 2.1.1.72 0.775
4rtj SFGDNA adenine methylase 2.1.1.72 0.770
4gbe SAHDNA adenine methylase 2.1.1.72 0.754
4rtn SAHDNA adenine methylase 2.1.1.72 0.753
4rto SFGDNA adenine methylase 2.1.1.72 0.753
2g1p SAHDNA adenine methylase 2.1.1.72 0.724
1nw5 SAMModification methylase RsrI 2.1.1.72 0.710
4rtq SAHDNA adenine methylase 2.1.1.72 0.710
1yf3 SAHDNA adenine methylase / 0.708
4rts SAMDNA adenine methylase 2.1.1.72 0.708
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.703
4gol SA8DNA adenine methylase 2.1.1.72 0.701
3axt SAMtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.697
1eg2 MTAModification methylase RsrI 2.1.1.72 0.694
4rtl SFGDNA adenine methylase 2.1.1.72 0.683
3tm4 SAMUncharacterized protein / 0.678
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.672
3qv2 SAH5-cytosine DNA methyltransferase / 0.671
1nw6 SFGModification methylase RsrI 2.1.1.72 0.669
1g60 SAMModification methylase MboII 2.1.1.72 0.666
1skm SAHModification methylase HhaI 2.1.1.37 0.665
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.665
1af7 SAHChemotaxis protein methyltransferase 2.1.1.80 0.663
2zcj SAHModification methylase HhaI 2.1.1.37 0.663
4poo SAMPutative RNA methylase / 0.659
3axs SFGtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.656
3ldg SAHUncharacterized protein / 0.654
1uay ADNOxidoreductase / 0.653
1boo SAHModification methylase PvuII 2.1.1.113 0.652
4ymg SAMPutative SAM-dependent O-methyltranferase / 0.650
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.650