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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrm A3T Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.923
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.893
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.892
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.888
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.879
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.878
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.877
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.874
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.873
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.861
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.859
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.850
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.784
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.776
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.774
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.768
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.761
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.759
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.753
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.747
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.721
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.718
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.717
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.709
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.692
2en5 SAHDiphthine synthase / 0.673
2dv3 SAHDiphthine synthase / 0.672
2eh4 SAHDiphthine synthase / 0.672
2eld SAHDiphthine synthase / 0.672
2pb6 SAHDiphthine synthase / 0.669
2hux SAHDiphthine synthase / 0.667
2p5c SAHDiphthine synthase / 0.665
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.662
2el3 SAHDiphthine synthase / 0.660
2owv SAHDiphthine synthase / 0.659
2e15 SAHDiphthine synthase / 0.655