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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrl A3S Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.910
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.906
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.901
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.898
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.886
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.876
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.859
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.857
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.839
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.837
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.826
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.825
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.799
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.790
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.784
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.784
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.777
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.770
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.756
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.753
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.752
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.736
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.722
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.720
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.716
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.692
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.669
3tw6 ADPPyruvate carboxylase / 0.654
2e8s SAHDiphthine synthase / 0.653
2ek4 SAHDiphthine synthase / 0.653
2eka SAHDiphthine synthase / 0.653
2el0 SAHDiphthine synthase / 0.653
2en5 SAHDiphthine synthase / 0.653
2eeq SAHDiphthine synthase / 0.652
2egs SAHDiphthine synthase / 0.652
2e8q SAHDiphthine synthase / 0.651
2emr SAHDiphthine synthase / 0.650
2p2x SAHDiphthine synthase / 0.650
2p5f SAHDiphthine synthase / 0.650
2pch SAHDiphthine synthase / 0.650