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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrk A3T Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.891
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.879
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.865
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.862
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.861
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.860
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.857
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.856
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.856
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.843
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.826
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.820
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.803
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.771
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.762
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.726
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.724
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.723
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.720
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.720
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.714
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.712
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.712
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.712
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.680
2e8q SAHDiphthine synthase / 0.656
3tw6 ADPPyruvate carboxylase / 0.655
4cnf MTASpoU rRNA methylase / 0.654
2eeq SAHDiphthine synthase / 0.653