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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rr7 A3S Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.939
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.897
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.895
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.877
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.876
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.874
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.873
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.870
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.868
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.867
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.860
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.818
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.814
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.797
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.791
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.767
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.749
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.746
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.744
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.737
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.724
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.721
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.713
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.706
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.694
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.677
2el3 SAHDiphthine synthase / 0.668
2pb5 SAHDiphthine synthase / 0.668
1vce SAHDiphthine synthase / 0.663
2vuw 5IDSerine/threonine-protein kinase haspin 2.7.11.1 0.661
2hux SAHDiphthine synthase / 0.660
2e8h SAHDiphthine synthase / 0.656
2eld SAHDiphthine synthase / 0.656
2p2x SAHDiphthine synthase / 0.656
4xlv ACPInsulin receptor 2.7.10.1 0.654
2p5f SAHDiphthine synthase / 0.653
3eei MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.652
1wng SAHDiphthine synthase / 0.651
2ek2 SAHDiphthine synthase / 0.651
2ek4 SAHDiphthine synthase / 0.651
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.650
2el0 SAHDiphthine synthase / 0.650