Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rnh C2E Motility regulator

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rnh C2EMotility regulator / 1.062
4hjf C2EGGDEF family protein / 0.754
4y9q C2EUncharacterized protein / 0.729
3gg1 C2EUncharacterized protein / 0.715
3gfx C2EUncharacterized protein / 0.694
3gfz C2EUncharacterized protein / 0.688
3gg0 C2EUncharacterized protein / 0.672
4lj3 C2ECyclic di-GMP phosphodiesterase YahA 3.1.4 0.671
3pjt C2EDiguanylate cyclase/phosphodiesterase / 0.670
4ihj GTPTubulin alpha-1B chain / 0.659