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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rdi ATP tRNA threonylcarbamoyladenosine dehydratase 6.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rdi ATPtRNA threonylcarbamoyladenosine dehydratase 6.1 1.000
4d79 ATPtRNA threonylcarbamoyladenosine dehydratase 6.1 0.863
3h9j APCMccB protein / 0.700
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.686
4xrg NADHomospermidine synthase 2.5.1.44 0.674
3lov FADProtoporphyrinogen oxidase / 0.668
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.667
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.661
4xq9 NADHomospermidine synthase 2.5.1.44 0.661
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.660
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.660
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.659
4plp NADHomospermidine synthase 2.5.1.44 0.656
4gus FADLysine-specific histone demethylase 1B 1 0.655
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.654
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
3lcc SAHThiocyanate methyltransferase 1 / 0.653
4fn4 NADShort chain dehydrogenase / 0.653
4pgh SAMCaffeic acid O-methyltransferase / 0.653
4y9d NAIC alpha-dehydrogenase / 0.653
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.652
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.652
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.651
3gu3 SAHMethyltransferase / 0.651