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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rcv NDP 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.838
4gae NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.751
2jcx NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.746
4aic NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.682
4mfe BTNPyruvate carboxylase / 0.681
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.679
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.674
3a14 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.672
4pah LNRPhenylalanine-4-hydroxylase 1.14.16.1 0.665
2whq HI6Acetylcholinesterase 3.1.1.7 0.661
3anl NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.657
2jcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.655
4loc BTNPyruvate carboxylase / 0.655
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.654
3h2s NDPPutative NADH-flavin reductase / 0.653
1m9t INENitric oxide synthase, inducible 1.14.13.39 0.652
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.651
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.650